lundi 24 novembre 2025
| Heures | événement | (+) |
| 14:00 - 14:30 | Welcome/introduction | |
| 14:30 - 15:10 | Tutorial deep learning in phylodynamics - Vincent Garot/Samuel Alizon | |
| 15:10 - 15:35 | Simulation-based inference of phylodynamic models via neural posterior estimation - Francesco Pinotti | |
| 15:35 - 16:10 | Pause café | |
| 16:10 - 16:35 | Marginal likelihood estimation in simulation-based inference via neural density estimation - Paul Bastide | |
| 16:35 - 17:00 | A case study in improving the computational performance of Bayesian phylogenetic inference - Joëlle Barido-Sottani |
mardi 25 novembre 2025
| Heures | événement | (+) |
| 09:00 - 09:45 | Time-measured phylogenies of invasive plant pathogens: How far back can we go? - Eduardo Moralejo | |
| 09:45 - 10:10 | Application of virus phylogeography and phylodynamics in wild plant systems - Carolyn M. Malmstrom | |
| 10:10 - 10:45 | Pause café | |
| 10:45 - 11:10 | Beyond host plants: integrating environmental sequences into the phylogeography of sobemoviruses - Denis Fargette | |
| 11:10 - 11:35 | Unravelling the genetic diversity and introduction history of Ralstonia solanacearum in mainland France - Amandine Cunty | |
| 11:35 - 12:00 | Bayesian phylodynamic approaches to quantify superspreading in bacterial STI outbreaks - Jordi Sevilla | |
| 12:00 - 14:00 | Déjeuner (Café du village, 21 Rue Albert Bayet, Paris) | |
| 14:00 - 14:45 | Estimating the rate of geographical spread of pathogens using pairwise genetic distance distributions - Noémie Lefrancq | |
| 14:45 - 15:10 | Is Simpler Better? Effects of Phylodynamic Model Misspecification on Epidemiological Estimates - Anna Zhukova | |
| 15:10 - 15:35 | Evaluating Methods to Model Heterogeneity of Molecular Evolution in Pathogens - John Tay | |
| 15:35 - 16:10 | Pause café | |
| 16:10 - 16:35 | Navigating Sampling Bias in Discrete Phylogeographic Analysis: Assessing the Performance of an Adjusted Bayes Factor - Fabiana Gambiano | |
| 16:35 - 17:00 | Unravelling the regional spread of Pestivirus bovis in France using genomic epidemiology - Claire Lescoat |
mercredi 26 novembre 2025
| Heures | événement | (+) |
| 09:00 - 09:45 | Surveillance of respiratory pathogens in indoor air environments - Emmanuel André | |
| 09:45 - 10:10 | Tuning the Molecular Clock: Assessing Uncertainty in Viral Divergence Time Estimation from Serially Sampled Data - Simona Ivanov | |
| 10:10 - 10:45 | Pause café | |
| 10:45 - 11:10 | Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived - Florence Débarre | |
| 11:10 - 11:35 | Benchmarking machine learning, population genetics, and GWAS approaches for Listeria monocytogenes source attribution - Isis Lorenzo | |
| 11:35 - 12:00 | Closing discussion | |
| 12:00 - 14:00 | Déjeuner (Café du village, 21 Rue Albert Bayet, Paris) |