Programme

Semaine Lun. 24 Mar. 25 Mer. 26 Liste

	Lun. 24	Mar. 25	Mer. 26
09:00 10:00 11:00 12:00 13:00 14:00 15:00 16:00 17:00	Welcome/introduction 14:00 - 14:30 (30min) Welcome/introduction Tutorial deep learning in phylodynamics 14:30 - 15:10 (40min) Tutorial deep learning in phylodynamics Vincent Garot/Samuel Alizon Simulation-based inference of phylodynamic models via neural posterior estimation 15:10 - 15:35 (25min) Simulation-based inference of phylodynamic models via neural posterior estimation Francesco Pinotti Pause café 15:35 - 16:10 (35min) Pause café Marginal likelihood estimation in simulation-based inference via neural density estimation 16:10 - 16:35 (25min) Marginal likelihood estimation in simulation-based inference via neural density estimation Paul Bastide A case study in improving the computational performance of Bayesian phylogenetic inference 16:35 - 17:00 (25min) A case study in improving the computational performance of Bayesian phylogenetic inference Joëlle Barido-Sottani	Time-measured phylogenies of invasive plant pathogens: How far back can we go? 9:00 - 9:45 (45min) Time-measured phylogenies of invasive plant pathogens: How far back can we go? Eduardo Moralejo Application of virus phylogeography and phylodynamics in wild plant systems 9:45 - 10:10 (25min) Application of virus phylogeography and phylodynamics in wild plant systems Carolyn M. Malmstrom Pause café 10:10 - 10:45 (35min) Pause café Beyond host plants: integrating environmental sequences into the phylogeography of sobemoviruses 10:45 - 11:10 (25min) Beyond host plants: integrating environmental sequences into the phylogeography of sobemoviruses Denis Fargette Unravelling the genetic diversity and introduction history of Ralstonia solanacearum in mainland France 11:10 - 11:35 (25min) Unravelling the genetic diversity and introduction history of Ralstonia solanacearum in mainland France Amandine Cunty Bayesian phylodynamic approaches to quantify superspreading in bacterial STI outbreaks 11:35 - 12:00 (25min) Bayesian phylodynamic approaches to quantify superspreading in bacterial STI outbreaks Jordi Sevilla Déjeuner 12:00 - 14:00 (2h) Déjeuner Café du village, 21 Rue Albert Bayet, Paris Estimating the rate of geographical spread of pathogens using pairwise genetic distance distributions 14:00 - 14:45 (45min) Estimating the rate of geographical spread of pathogens using pairwise genetic distance distributions Noémie Lefrancq Is Simpler Better? Effects of Phylodynamic Model Misspecification on Epidemiological Estimates 14:45 - 15:10 (25min) Is Simpler Better? Effects of Phylodynamic Model Misspecification on Epidemiological Estimates Anna Zhukova Evaluating Methods to Model Heterogeneity of Molecular Evolution in Pathogens 15:10 - 15:35 (25min) Evaluating Methods to Model Heterogeneity of Molecular Evolution in Pathogens John Tay Pause café 15:35 - 16:10 (35min) Pause café Navigating Sampling Bias in Discrete Phylogeographic Analysis: Assessing the Performance of an Adjusted Bayes Factor 16:10 - 16:35 (25min) Navigating Sampling Bias in Discrete Phylogeographic Analysis: Assessing the Performance of an Adjusted Bayes Factor Fabiana Gambiano Unravelling the regional spread of Pestivirus bovis in France using genomic epidemiology 16:35 - 17:00 (25min) Unravelling the regional spread of Pestivirus bovis in France using genomic epidemiology Claire Lescoat	Surveillance of respiratory pathogens in indoor air environments 9:00 - 9:45 (45min) Surveillance of respiratory pathogens in indoor air environments Emmanuel André Tuning the Molecular Clock: Assessing Uncertainty in Viral Divergence Time Estimation from Serially Sampled Data 9:45 - 10:10 (25min) Tuning the Molecular Clock: Assessing Uncertainty in Viral Divergence Time Estimation from Serially Sampled Data Simona Ivanov Pause café 10:10 - 10:45 (35min) Pause café Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived 10:45 - 11:10 (25min) Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived Florence Débarre Benchmarking machine learning, population genetics, and GWAS approaches for Listeria monocytogenes source attribution 11:10 - 11:35 (25min) Benchmarking machine learning, population genetics, and GWAS approaches for Listeria monocytogenes source attribution Isis Lorenzo Closing discussion 11:35 - 12:00 (25min) Closing discussion Déjeuner 12:00 - 14:00 (2h) Déjeuner Café du village, 21 Rue Albert Bayet, Paris

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